STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_023876Longin domain-containing protein; Belongs to the synaptobrevin family. (266 aa)    
Predicted Functional Partners:
Ccrd_017654
Sec1-like protein; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.923
Ccrd_016788
SNARE-complex protein Syntaxin-18 N-terminal.
   
 0.916
Ccrd_016797
Syntaxin/epimorphin, conserved site-containing protein; Belongs to the syntaxin family.
   
 0.911
Ccrd_012125
Membrin; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.
    
 0.900
Ccrd_007444
Membrin; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.
    
 0.900
Ccrd_008298
Target SNARE coiled-coil domain-containing protein.
    
 0.887
Ccrd_017816
Target SNARE coiled-coil domain-containing protein.
    
 0.887
Ccrd_010938
RZZ complex, subunit Zw10.
    
 0.887
Ccrd_025288
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
   
 0.883
Ccrd_020452
Syntaxin/epimorphin, conserved site-containing protein; Belongs to the syntaxin family.
   
 0.883
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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