STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_023451Myc-type, basic helix-loop-helix (BHLH) domain-containing protein. (235 aa)    
Predicted Functional Partners:
Ccrd_014879
Homeodomain-like protein.
  
     0.525
Ccrd_001355
GDP-fucose protein O-fucosyltransferase.
  
     0.522
Ccrd_017660
GDP-fucose protein O-fucosyltransferase.
  
     0.518
Ccrd_017791
BTB/POZ fold.
  
     0.506
Ccrd_011810
Uncharacterized protein.
  
     0.506
Ccrd_018997
Lateral organ boundaries domain-containing protein.
  
     0.492
Ccrd_015887
Uncharacterized protein.
  
     0.490
Ccrd_014720
APO domain-containing protein.
  
     0.490
Ccrd_016748
Alpha crystallin/Hsp20 domain-containing protein.
  
     0.489
Ccrd_019978
BHLH domain-containing protein.
  
     0.489
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.