STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_023007Thioredoxin. (172 aa)    
Predicted Functional Partners:
Ccrd_024295
Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant.
  
 0.846
Ccrd_009481
FAD-dependent pyridine nucleotide-disulfide oxidoreductase.
  
 
 0.736
Ccrd_018210
Thioredoxin reductase.
  
 
 0.736
Ccrd_014262
Thioredoxin.
   
 
 0.717
Ccrd_008307
Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant.
  
 0.706
Ccrd_025641
Peptide methionine sulfoxide reductase MsrA.
   
 0.638
Ccrd_005655
Peptide methionine sulfoxide reductase MsrA.
   
 0.638
Ccrd_015400
Peptide methionine sulfoxide reductase MsrA.
   
 0.638
Ccrd_004353
Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.
    
 0.632
Ccrd_010428
Rhodanese-like domain-containing protein.
    
 0.598
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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