STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_022785Malate synthase; Belongs to the malate synthase family. (547 aa)    
Predicted Functional Partners:
Ccrd_017518
Isocitrate lyase.
 
 
 0.998
Ccrd_021126
Citrate synthase; Belongs to the citrate synthase family.
  
 0.992
Ccrd_016431
Citrate synthase.
  
 0.992
Ccrd_006643
Malate dehydrogenase.
   
 0.987
Ccrd_025788
Malate dehydrogenase.
   
 0.987
Ccrd_004847
Malate dehydrogenase.
   
 0.987
Ccrd_023241
Uncharacterized protein.
   
 0.987
Ccrd_006845
Malic enzyme, NAD-binding.
    
 0.969
Ccrd_021190
Malic enzyme.
    
 0.969
Ccrd_007663
Malic enzyme, NAD-binding.
    
 0.969
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.