STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_022681No apical meristem (NAM) protein. (338 aa)    
Predicted Functional Partners:
Ccrd_020096
Putative S-adenosyl-L-methionine-dependent methyltransferase.
  
 
 0.553
Ccrd_013544
Calcium-binding EF-hand.
  
 
 0.553
Ccrd_008997
Uncharacterized protein.
  
 
 0.546
Ccrd_026904
Uncharacterized protein.
  
 
   0.537
Ccrd_006184
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
  
 
 0.532
Ccrd_008999
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
  
 
 0.530
Ccrd_015135
Glyoxal_oxid_N domain-containing protein.
  
 
  0.526
Ccrd_015009
B3 DNA binding domain-containing protein.
  
  
 0.522
Ccrd_017276
Protein phosphatase 2C (PP2C)-like protein.
  
 
  0.522
Ccrd_026405
F-box domain, cyclin-like protein.
  
 
   0.518
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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