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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_022736Leucine-rich repeat-containing protein. (269 aa)    
Predicted Functional Partners:
Ccrd_005062
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.998
Ccrd_007014
Armadillo-like helical.
   
 0.996
Ccrd_008981
DNA/RNA helicase, DEAD/DEAH box type, N-terminal.
    
 0.995
Ccrd_003455
Small nuclear ribonucleoprotein Sm D2.
   
 0.991
Ccrd_003323
Splicing factor subunit; Belongs to the SF3B5 family.
   
 0.991
Ccrd_010304
Uncharacterized protein.
   
 0.991
Ccrd_009088
Small nuclear ribonucleoprotein Sm D2.
   
 0.991
Ccrd_014546
Matrin-type domain-containing protein.
   
 0.991
Ccrd_003824
Nucleotide-binding, alpha-beta plait.
  
 0.990
Ccrd_023741
JAB1/Mov34/MPN/PAD-1.
    
 
 0.989
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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