STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_021746F-box domain, cyclin-like protein. (407 aa)    
Predicted Functional Partners:
Ccrd_010518
F-box associated domain, type 1.
  
 
   0.554
Ccrd_026818
Uncharacterized protein.
  
     0.533
Ccrd_026379
Wall-associated receptor kinase galacturonan-binding domain-containing protein.
  
 
   0.533
Ccrd_010183
Mannose-binding lectin.
  
 
   0.531
Ccrd_008819
Pectinesterase inhibitor.
  
     0.530
Ccrd_003305
DUF4378 domain-containing protein.
  
  
  0.529
Ccrd_012063
DUF4378 domain-containing protein.
  
     0.529
Ccrd_016713
Uncharacterized protein.
  
     0.529
Ccrd_015696
Myc-type, basic helix-loop-helix (BHLH) domain-containing protein.
  
     0.526
Ccrd_000578
Uncharacterized protein.
  
 
   0.525
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.