STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_021462Pentatricopeptide repeat-containing protein. (1012 aa)    
Predicted Functional Partners:
Ccrd_006818
CRM domain-containing protein.
      
 0.682
Ccrd_022966
Plant organelle RNA recognition domain-containing protein.
  
   
 0.623
Ccrd_005917
Domain X.
   
  
 0.554
Ccrd_024553
Uncharacterized protein.
      
 0.524
Ccrd_002737
Uncharacterized protein.
  
     0.471
Ccrd_022022
Uncharacterized protein.
  
     0.466
Ccrd_014008
Uncharacterized protein.
  
     0.460
Ccrd_026646
Uncharacterized protein.
  
     0.458
Ccrd_021340
Uncharacterized protein.
  
     0.458
Ccrd_010310
Uncharacterized protein.
  
     0.456
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.