STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_020842Cytochrome b561, eukaryote. (355 aa)    
Predicted Functional Partners:
Ccrd_005742
Nucleotide-binding, alpha-beta plait.
   
 
 0.723
Ccrd_008951
Ribosomal protein L46.
   
   0.673
Ccrd_021875
Ribosomal protein L28.
   
 
 0.632
Ccrd_001512
Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
   
   0.622
Ccrd_000712
Ribosomal protein L3.
   
   0.622
Ccrd_002810
Double-stranded RNA-binding-like domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
   
   0.591
Ccrd_022042
Ribosomal protein L27/L41, mitochondrial.
   
 
 0.588
Ccrd_003963
Ribosomal protein S16.
   
 
 0.568
Ccrd_009195
Ribosomal protein L33.
   
   0.565
Ccrd_013518
Ribosomal protein L28.
   
 
 0.561
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.