STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_020644Carbohydrate binding module family 25. (932 aa)    
Predicted Functional Partners:
Ccrd_008109
Aspartate/ornithine carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
  
 
 0.984
Ccrd_025454
Starch synthase, chloroplastic/amyloplastic; Belongs to the glycosyltransferase 1 family. Bacterial/plant glycogen synthase subfamily.
 
 
 0.978
Ccrd_016518
1,4-alpha-glucan-branching enzyme.
  
 
 0.902
Ccrd_024800
Poly(ADP-ribose) polymerase, regulatory domain-containing protein.
     
  0.900
Ccrd_014812
Glycoside hydrolase, catalytic domain-containing protein.
  
 
 0.892
Ccrd_013054
Uncharacterized protein.
  
 
 0.864
Ccrd_003524
Glycoside hydrolase, catalytic domain-containing protein.
  
 
 0.856
Ccrd_003341
1,4-alpha-glucan-branching enzyme.
  
 
 0.842
Ccrd_009416
Carbohydrate-binding-like fold.
  
 
 0.834
Ccrd_009710
Aamy domain-containing protein.
  
 
 0.814
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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