STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_020444RRM domain-containing protein. (349 aa)    
Predicted Functional Partners:
Ccrd_011366
Armadillo-type fold.
    
 0.563
Ccrd_004021
Nuclear cap-binding protein subunit 2.
    
 0.557
Ccrd_011669
Glycosyl transferase, family 1.
    
 
 0.548
Ccrd_004049
Oligosaccharyl transferase, STT3 subunit.
      
 0.523
Ccrd_005062
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.493
Ccrd_007014
Armadillo-like helical.
    
 0.459
Ccrd_021270
Elongation factor, GTP-binding domain-containing protein.
   
 0.457
Ccrd_008991
Sde2 N-terminal domain-containing protein.
   
  0.444
Ccrd_003720
DNA-directed RNA polymerase, subunit N/Rpb10.
    
  0.421
Ccrd_021083
RNA-processing protein, HAT helix.
    
 
 0.408
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.