STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_020404Rab-GAP TBC domain-containing protein. (629 aa)    
Predicted Functional Partners:
Ccrd_005688
NUC153-like protein.
   
  
 0.525
Ccrd_006131
WD40 repeat-containing protein.
      
 0.521
Ccrd_007831
Autophagy-related protein.
   
 0.476
Ccrd_002413
Autophagy-related protein.
   
 0.476
Ccrd_003385
Autophagy-related protein.
   
 0.476
Ccrd_000799
Autophagy-related protein.
   
 0.476
Ccrd_022622
Autophagy-related protein.
   
 0.476
Ccrd_012252
Autophagy-related protein.
   
 0.476
Ccrd_025966
Ran GTPase.
    
 0.444
Ccrd_004716
Small GTPase superfamily.
    
 0.444
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.