STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_020278Chloramphenicol acetyltransferase-like domain-containing protein. (546 aa)    
Predicted Functional Partners:
Ccrd_021160
Acyl carrier protein-like protein.
  
 0.480
Ccrd_017534
Uncharacterized protein.
  
     0.460
Ccrd_011314
Uncharacterized protein.
  
     0.437
Ccrd_026621
Uncharacterized protein.
  
     0.430
Ccrd_008668
Uncharacterized protein.
  
     0.422
Ccrd_018604
Uncharacterized protein.
  
     0.421
Ccrd_024787
Uncharacterized protein.
  
     0.414
Ccrd_023573
Myc-type, basic helix-loop-helix (BHLH) domain-containing protein.
  
     0.405
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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