STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_019666Protein-tyrosine phosphatase, active site-containing protein. (208 aa)    
Predicted Functional Partners:
Ccrd_000561
Photosystem I PsaF, reaction centre subunit III.
   
 
 0.916
Ccrd_006174
Uncharacterized protein.
   
 
 0.913
Ccrd_025524
Photosystem I PsaG/PsaK domain-containing protein.
   
 
 0.911
Ccrd_022551
Photosystem I PsaG, plant.
   
 
 0.910
Ccrd_010776
Photosystem I PsaO.
   
 
 0.873
Ccrd_023103
Photosystem I PsaN, reaction centre subunit N.
   
 
 0.824
Ccrd_004976
Photosystem I PsaH, reaction centre subunit VI.
   
 
 0.814
Ccrd_023789
Photosystem I PsaH, reaction centre subunit VI.
   
 
 0.814
Ccrd_013780
Electron transport accessory protein-like domain-containing protein.
   
 
 0.776
Ccrd_009252
Electron transport accessory protein-like domain-containing protein.
   
 
 0.776
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.