STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_019355Amino acid transporter, transmembrane. (488 aa)    
Predicted Functional Partners:
Ccrd_014022
Oligopeptide transporter OPT superfamily.
  
     0.520
Ccrd_008363
Uncharacterized protein.
  
     0.504
Ccrd_022115
Uncharacterized protein.
  
     0.500
Ccrd_020833
Ribosomal_L18_c domain-containing protein.
  
     0.483
Ccrd_018367
Amino acid transporter, transmembrane.
  
     0.476
Ccrd_007274
Uncharacterized protein.
  
     0.472
Ccrd_017675
Amino acid transporter, transmembrane.
  
     0.467
Ccrd_014644
Amino acid transporter, transmembrane.
  
     0.454
Ccrd_013730
Uncharacterized protein.
  
    0.452
Ccrd_010082
Amino acid transporter, transmembrane.
  
     0.447
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.