STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_016828Fatty acid desaturase, type 1. (438 aa)    
Predicted Functional Partners:
Ccrd_020827
Beta-Casp domain-containing protein.
    
 0.553
Ccrd_001710
Beta-Casp domain-containing protein.
    
 0.533
Ccrd_025097
Alpha/beta hydrolase fold-1.
      
 0.524
Ccrd_002795
Integrator complex subunit 3.
    
 0.520
Ccrd_016415
Armadillo-type fold.
    
 0.514
Ccrd_025864
Glycerol-3-phosphate acyltransferase, chloroplastic; Esterifies acyl-group from acyl-ACP to the sn-1 position of glycerol-3-phosphate. The enzyme from chilling-resistant plants discriminates against non-fluid palmitic acid and selects oleic acid whereas the enzyme from sensitive plants accepts both fatty acids. Belongs to the GPAT/DAPAT family.
   
 
 0.478
Ccrd_018416
Armadillo-like helical.
    
 0.457
Ccrd_018433
Armadillo-type fold.
    
 0.457
Ccrd_001860
Nucleic acid-binding, OB-fold.
    
  0.434
Ccrd_016201
Cytochrome b5, heme-binding site-containing protein; Belongs to the cytochrome b5 family.
     
 0.415
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.