STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_016478Alpha-amylase. (377 aa)    
Predicted Functional Partners:
Ccrd_013054
Uncharacterized protein.
  
 
 0.828
Ccrd_009416
Carbohydrate-binding-like fold.
  
 
 0.825
Ccrd_019425
Alpha-amylase, C-terminal all beta.
  
 
 0.813
Ccrd_014812
Glycoside hydrolase, catalytic domain-containing protein.
  
 
 0.781
Ccrd_005629
Galactose mutarotase-like domain-containing protein.
  
 
 0.776
Ccrd_009668
Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
  
 
 0.758
Ccrd_003524
Glycoside hydrolase, catalytic domain-containing protein.
  
 
 0.753
Ccrd_022404
Glycosyl transferase, family 1; Belongs to the glycosyltransferase 1 family.
   
 0.751
Ccrd_016518
1,4-alpha-glucan-branching enzyme.
  
 
 0.747
Ccrd_005069
Aminotransferase, class I/classII; In the C-terminal section; belongs to the pectinesterase family.
      
 0.739
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
Server load: low (20%) [HD]