STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_016316Tat binding protein 1-interacting. (264 aa)    
Predicted Functional Partners:
Ccrd_025273
Meiotic nuclear division protein 1 homolog; Required for proper homologous chromosome pairing and efficient cross-over and intragenic recombination during meiosis. Belongs to the MND1 family.
   
 0.996
Ccrd_023748
Signal transduction histidine kinase, phosphotransfer (Hpt) domain-containing protein.
      
 0.739
Ccrd_014380
Signal transduction histidine kinase, phosphotransfer (Hpt) domain-containing protein.
      
 0.723
Ccrd_023200
Signal transduction histidine kinase, phosphotransfer (Hpt) domain-containing protein.
      
 0.723
Ccrd_008833
DNA recombination and repair protein Rad51, C-terminal.
   
 0.717
Ccrd_020174
AAA+ ATPase domain-containing protein; Belongs to the RecA family.
   
 0.717
Ccrd_002401
DNA mismatch repair protein MutS, clamp.
   
  
 0.687
Ccrd_015912
DNA-binding HORMA.
      
 0.682
Ccrd_014223
DNA repair nuclease, XPF-type/Helicase.
   
  
 0.594
Ccrd_007864
Spo11/DNA topoisomerase VI, subunit A.
    
 
 0.549
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.