STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_016268Thiazole biosynthesis; Belongs to the PdxS/SNZ family. (87 aa)    
Predicted Functional Partners:
Ccrd_021546
Glutamine amidotransferase subunit PdxT.
 
 0.988
Ccrd_004966
Aldolase-type TIM barrel; Belongs to the PdxS/SNZ family.
  
 
   0.822
Ccrd_015679
SOR_SNZ domain-containing protein; Belongs to the PdxS/SNZ family.
  
 
   0.822
Ccrd_012648
Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate.
      
 0.671
Ccrd_007896
Asparagine synthase.
    
 0.653
Ccrd_025436
NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX; Belongs to the NnrE/AIBP family.
  
  
 0.620
Ccrd_026023
Imidazole glycerol phosphate synthase hisHF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The glutaminase domain produces the ammonia necessary for the cyclase domain to produce IGP and AICAR from PRFAR. The ammonia is channeled to the active site of the cyclase domain. In the C-terminal section; belongs to the HisA/HisF family.
    
 0.612
Ccrd_020485
NAD(P)-binding domain-containing protein.
    
  0.553
Ccrd_005360
Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate.
      
 0.510
Ccrd_004563
Glutamine amidotransferase type 1.
    
 0.509
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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