STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_015631SPX, N-terminal. (162 aa)    
Predicted Functional Partners:
Ccrd_003659
Homeodomain-like protein.
    
 0.724
Ccrd_017842
Homeodomain-like protein.
    
 0.724
Ccrd_014258
Uncharacterized protein.
    
 0.724
Ccrd_001992
Ankyrin repeat-containing protein.
    
 0.557
Ccrd_001991
Ankyrin repeat-containing protein.
    
 0.557
Ccrd_001989
Uncharacterized protein.
    
 0.557
Ccrd_001993
PGG domain-containing protein.
    
 0.557
Ccrd_026668
Homeodomain-like protein.
    
 0.457
Ccrd_001216
Homeodomain-like protein.
    
 0.457
Ccrd_007584
Ankyrin repeat-containing protein.
    
 0.438
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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