STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_015586DUF862 domain-containing protein. (231 aa)    
Predicted Functional Partners:
Ccrd_025709
Uncharacterized protein.
      
 0.524
Ccrd_008602
Uncharacterized protein.
      
 0.524
Ccrd_002732
Tetratricopeptide-like helical.
      
 0.524
Ccrd_013873
Tetrapyrrole methylase.
      
 0.524
Ccrd_023276
Mitochondrial glycoprotein.
      
 0.523
Ccrd_020831
Urease accessory protein UreF.
      
 0.523
Ccrd_026631
Concanavalin A-like lectin/glucanase, subgroup.
      
 0.523
Ccrd_004155
Tetratricopeptide-like helical.
      
 0.519
Ccrd_018328
Regulatory factor, effector, bacterial.
      
 0.519
Ccrd_016666
Proteasome subunit Rpn10.
    
   0.485
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.