Ccrd_015545 protein (Cynara cardunculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Ccrd_015545

Uncharacterized protein. (170 aa)

Predicted Functional Partners:

Ccrd_021623

0.544

Ccrd_025589

0.527

Ccrd_005089

0.524

Ccrd_019312

0.519

Ccrd_018396

0.516

Ccrd_010864

0.502

Ccrd_001083

0.498

Ccrd_023259

0.497

Ccrd_004509

0.493

Ccrd_000185

0.485

Your Current Organism:

Cynara cardunculus

NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ccrd_000185	Ccrd_001083	A0A103XVL8	A0A103XU15	Uncharacterized protein.	Uncharacterized protein.	0.446
Ccrd_000185	Ccrd_005089	A0A103XVL8	A0A124SC63	Uncharacterized protein.	Uncharacterized protein.	0.430
Ccrd_000185	Ccrd_010864	A0A103XVL8	A0A103YKH8	Uncharacterized protein.	Uncharacterized protein.	0.473
Ccrd_000185	Ccrd_015545	A0A103XVL8	A0A103YBN1	Uncharacterized protein.	Uncharacterized protein.	0.485
Ccrd_000185	Ccrd_018396	A0A103XVL8	A0A103Y6B2	Uncharacterized protein.	Phloem protein 2-like protein.	0.433
Ccrd_000185	Ccrd_019312	A0A103XVL8	A0A118K183	Uncharacterized protein.	Uncharacterized protein.	0.458
Ccrd_000185	Ccrd_021623	A0A103XVL8	A0A103Y096	Uncharacterized protein.	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain-containing protein.	0.416
Ccrd_000185	Ccrd_023259	A0A103XVL8	A0A103XX72	Uncharacterized protein.	Uncharacterized protein.	0.404
Ccrd_000185	Ccrd_025589	A0A103XVL8	A0A118JH25	Uncharacterized protein.	Phloem protein 2-like protein.	0.470
Ccrd_001083	Ccrd_000185	A0A103XU15	A0A103XVL8	Uncharacterized protein.	Uncharacterized protein.	0.446
Ccrd_001083	Ccrd_004509	A0A103XU15	A0A103XMJ8	Uncharacterized protein.	Peptidase C15, pyroglutamyl peptidase I.	0.455
Ccrd_001083	Ccrd_005089	A0A103XU15	A0A124SC63	Uncharacterized protein.	Uncharacterized protein.	0.510
Ccrd_001083	Ccrd_010864	A0A103XU15	A0A103YKH8	Uncharacterized protein.	Uncharacterized protein.	0.430
Ccrd_001083	Ccrd_015545	A0A103XU15	A0A103YBN1	Uncharacterized protein.	Uncharacterized protein.	0.498
Ccrd_001083	Ccrd_018396	A0A103XU15	A0A103Y6B2	Uncharacterized protein.	Phloem protein 2-like protein.	0.510
Ccrd_001083	Ccrd_019312	A0A103XU15	A0A118K183	Uncharacterized protein.	Uncharacterized protein.	0.472
Ccrd_001083	Ccrd_021623	A0A103XU15	A0A103Y096	Uncharacterized protein.	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain-containing protein.	0.524
Ccrd_001083	Ccrd_023259	A0A103XU15	A0A103XX72	Uncharacterized protein.	Uncharacterized protein.	0.424
Ccrd_001083	Ccrd_025589	A0A103XU15	A0A118JH25	Uncharacterized protein.	Phloem protein 2-like protein.	0.520
Ccrd_004509	Ccrd_001083	A0A103XMJ8	A0A103XU15	Peptidase C15, pyroglutamyl peptidase I.	Uncharacterized protein.	0.455

page 1 of 5

Server load: low (24%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About