STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_015393Zinc finger, CCCH-type. (576 aa)    
Predicted Functional Partners:
Ccrd_018206
Exoribonuclease, phosphorolytic domain 2.
    
  0.641
Ccrd_022461
D-aminoacyl-tRNA deacylase.
    
 0.508
Ccrd_016382
Uncharacterized protein.
    
 0.508
Ccrd_011894
mRNA decapping protein 2, Box A.
   
 0.474
Ccrd_014759
mRNA decapping protein 2, Box A.
   
 0.474
Ccrd_017553
tRNA-dihydrouridine(47) synthase [NAD(P)(+)].
      
 0.470
Ccrd_003517
Exosome complex RNA-binding protein 1/RRP40/RRP4.
    
 0.443
Ccrd_021890
Exoribonuclease, phosphorolytic domain 1.
    
  0.443
Ccrd_014298
Exosome complex component CSL4.
     
 0.441
Ccrd_026103
Nucleotide-binding, alpha-beta plait.
      
 0.436
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.