STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_015210UDP-glucose 6-dehydrogenase. (480 aa)    
Predicted Functional Partners:
Ccrd_019581
dTDP-4-dehydrorhamnose reductase.
  
 
 0.967
Ccrd_011054
dTDP-4-dehydrorhamnose reductase.
  
 
 0.967
Ccrd_012319
NAD-dependent epimerase/dehydratase.
  
 0.952
Ccrd_007269
NAD-dependent epimerase/dehydratase.
  
 0.952
Ccrd_021614
NAD-dependent epimerase/dehydratase.
  
 0.952
Ccrd_018662
UTP--glucose-1-phosphate uridylyltransferase.
     
 0.944
Ccrd_007246
UTP--glucose-1-phosphate uridylyltransferase.
     
 0.939
Ccrd_012302
UTP--glucose-1-phosphate uridylyltransferase.
     
 0.939
Ccrd_007997
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
  
 
 0.920
Ccrd_002869
NAD-dependent epimerase/dehydratase.
  
 
 0.920
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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