STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_015136Uncharacterized protein. (542 aa)    
Predicted Functional Partners:
Ccrd_003406
Mitochondrial carrier domain-containing protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.
   
 0.707
Ccrd_018861
Uncharacterized protein.
   
 0.707
Ccrd_023935
DNA/RNA helicase, DEAD/DEAH box type, N-terminal.
    
 0.701
Ccrd_012712
E3 ubiquitin-protein ligase FANCL.
    
 0.589
Ccrd_013096
DNA repair protein rad10.
    
 0.556
Ccrd_014223
DNA repair nuclease, XPF-type/Helicase.
   
 0.547
Ccrd_002681
DNA repair nuclease, XPF-type/Helicase.
    
 0.531
Ccrd_002683
Uncharacterized protein.
    
 0.531
Ccrd_002682
Uncharacterized protein.
    
 0.531
Ccrd_006623
ASCH domain-containing protein.
    
 0.503
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.