STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_014978PI3K/PI4K domain-containing protein. (137 aa)    
Predicted Functional Partners:
Ccrd_015369
Phox/Bem1p.
   
 0.982
Ccrd_026117
Phox/Bem1p.
   
 0.982
Ccrd_023600
Phox/Bem1p.
   
 0.982
Ccrd_016666
Proteasome subunit Rpn10.
   
 0.960
Ccrd_004732
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
   
 0.954
Ccrd_012381
Nucleic acid-binding, OB-fold.
   
 0.937
Ccrd_021772
HECT-like protein.
   
 0.933
Ccrd_021771
Armadillo-like helical.
   
 0.933
Ccrd_000534
F-box domain, cyclin-like protein.
   
 0.932
Ccrd_017881
Zinc finger, RING/FYVE/PHD-type.
   
 0.914
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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