STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_014360Peptidylprolyl isomerase. (112 aa)    
Predicted Functional Partners:
Ccrd_003012
WD_REPEATS_REGION domain-containing protein.
    
 
 0.953
Ccrd_019751
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 
 0.929
Ccrd_019001
Major facilitator superfamily domain, general substrate transporter.
    
 
 0.929
Ccrd_023240
Uncharacterized protein.
    
 
 0.929
Ccrd_023283
G-protein beta WD-40 repeat-containing protein.
    
 
 0.915
Ccrd_012097
Uncharacterized protein.
   
 
 0.883
Ccrd_011649
Phosphoinositide phospholipase C.
    
 
 0.882
Ccrd_017275
Zinc finger, NF-X1-type.
    
 
 0.882
Ccrd_017064
G-protein beta WD-40 repeat-containing protein.
   
 
 0.854
Ccrd_013754
G-protein beta WD-40 repeat-containing protein.
   
 
 0.854
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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