STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_014037Plant regulator RWP-RK. (333 aa)    
Predicted Functional Partners:
Ccrd_025406
Protein kinase domain-containing protein.
    
 0.525
Ccrd_008539
Armadillo repeat-containing protein 3 and Serine/threonine-protein kinase CTR1.
    
 0.525
Ccrd_020976
Transcription factor, K-box.
     
 0.522
Ccrd_004218
Tetratricopeptide-like helical.
      
 0.506
Ccrd_020363
Tetratricopeptide-like helical.
      
 0.506
Ccrd_018666
Autophagy protein 5; Required for autophagy.
     
 0.444
Ccrd_015808
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation. Belongs to the ATG12 family.
     
 0.438
Ccrd_008614
B3 DNA binding domain-containing protein.
      
 0.436
Ccrd_007574
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
     
 0.415
Ccrd_003544
Aldolase-type TIM barrel.
   
 
 0.411
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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