STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_013076Small GTPase superfamily. (350 aa)    
Predicted Functional Partners:
Ccrd_014764
Sec1-like protein; Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.905
Ccrd_004551
Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.
   
 0.880
Ccrd_021295
Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.
   
 0.880
Ccrd_012967
Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.
   
 0.880
Ccrd_023313
Cullin repeat-like-containing domain-containing protein.
    
 0.865
Ccrd_020045
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
   
 0.829
Ccrd_008937
Uncharacterized protein.
    
 0.817
Ccrd_008938
WD40-repeat-containing domain-containing protein.
    
 0.817
Ccrd_008939
Ribosome control protein 1.
    
 0.817
Ccrd_004339
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
    
 0.804
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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