STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_012877Lipase, GDSL. (319 aa)    
Predicted Functional Partners:
Ccrd_024624
Peroxidase; Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.
  
 
   0.520
Ccrd_007943
Cupredoxin.
  
     0.515
Ccrd_002493
Cupredoxin.
  
     0.502
Ccrd_017520
Late embryogenesis abundant protein, LEA-14.
  
     0.487
Ccrd_006065
Cupredoxin.
  
     0.486
Ccrd_020656
Late embryogenesis abundant protein, LEA-14.
  
     0.485
Ccrd_004708
Transcription factor GRAS; Belongs to the GRAS family.
  
  0.474
Ccrd_016944
DUF4005 domain-containing protein.
  
     0.472
Ccrd_001379
COBRA-like protein; Belongs to the COBRA family.
  
     0.462
Ccrd_026854
Uncharacterized protein.
  
     0.461
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.