STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_012488Eukaryotic porin/Tom40. (276 aa)    
Predicted Functional Partners:
Ccrd_003544
Aldolase-type TIM barrel.
    
 0.729
Ccrd_003767
Eukaryotic porin/Tom40.
    
 0.706
Ccrd_017934
Eukaryotic porin/Tom40.
    
 0.706
Ccrd_018666
Autophagy protein 5; Required for autophagy.
     
 0.690
Ccrd_015808
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation. Belongs to the ATG12 family.
     
 0.654
Ccrd_016835
Bacterial surface antigen (D15).
   
 0.561
Ccrd_011681
Uncharacterized protein.
   
 0.561
Ccrd_012002
Mitochondrial outer membrane translocase complex, subunit Tom22, plant.
   
 
 0.529
Ccrd_014214
Mitochondrial outer membrane translocase complex, subunit Tom22, plant.
   
 
 0.529
Ccrd_024424
Cytochrome c, class I; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
   
 
 0.522
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.