STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_012076Cytochrome P450. (1277 aa)    
Predicted Functional Partners:
Ccrd_017339
Isopentenyl-diphosphate delta-isomerase, type 1.
   
 
 0.902
Ccrd_026371
Uncharacterized protein.
     
  0.900
Ccrd_026809
Polyprenyl synthetase.
     
  0.900
Ccrd_001365
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
     
  0.900
Ccrd_020093
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
     
  0.900
Ccrd_018893
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
     
  0.900
Ccrd_018535
Uncharacterized protein; Belongs to the FPP/GGPP synthase family.
     
  0.900
Ccrd_026812
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
     
  0.900
Ccrd_003532
Guanylate kinase.
     
  0.800
Ccrd_002857
tRNA isopentenyltransferase.
     
  0.800
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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