STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_012050Rad21_Rec8 domain-containing protein. (569 aa)    
Predicted Functional Partners:
Ccrd_013616
Structural maintenance of chromosomes protein.
   
 0.979
Ccrd_019130
Sister chromatid cohesion protein.
   
 0.967
Ccrd_009212
Structural maintenance of chromosomes protein.
   
 0.950
Ccrd_018046
DUF641 domain-containing protein.
   
 0.926
Ccrd_009663
DUF641 domain-containing protein.
   
 0.926
Ccrd_020947
Structural maintenance of chromosomes protein 5.
   
 0.907
Ccrd_008458
WAPL domain-containing protein.
  
 
 0.906
Ccrd_014051
Leucine-rich repeat, cysteine-containing subtype.
   
 0.887
Ccrd_019159
Structural maintenance of chromosomes protein.
   
 0.865
Ccrd_012081
Uncharacterized protein.
   
 0.851
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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