STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_011869Calcium-binding EF-hand; Belongs to the mitochondrial carrier (TC 2.A.29) family. (855 aa)    
Predicted Functional Partners:
Ccrd_008325
Calcium-binding EF-hand.
      
 0.673
Ccrd_002114
Uncharacterized protein.
  
   
 0.669
Ccrd_018291
AAA+ ATPase domain-containing protein.
      
 0.528
Ccrd_014568
AB hydrolase-1 domain-containing protein.
      
 0.524
Ccrd_013975
Uncharacterized protein.
      
 0.524
Ccrd_013617
Uncharacterized protein.
      
 0.524
Ccrd_012173
Uncharacterized protein.
      
 0.524
Ccrd_018135
Uncharacterized protein.
      
 0.524
Ccrd_013603
GDT1 family protein.
      
 0.523
Ccrd_012026
DnaJ domain-containing protein.
      
 0.523
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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