STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_011874Homeodomain-like protein. (1579 aa)    
Predicted Functional Partners:
Ccrd_007473
Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family.
    
 0.932
Ccrd_023485
G-protein beta WD-40 repeat-containing protein.
   
 0.927
Ccrd_012660
G-protein beta WD-40 repeat-containing protein.
   
 0.927
Ccrd_006296
Uncharacterized protein.
   
 0.926
Ccrd_004776
Transcriptional adapter.
    
 0.926
Ccrd_012849
Armadillo-type fold; Belongs to the PI3/PI4-kinase family.
   
 0.926
Ccrd_022826
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.890
Ccrd_014097
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.890
Ccrd_021667
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.890
Ccrd_001332
Uncharacterized protein.
    
 0.869
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.