STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_011777Optic atrophy 3-like protein. (169 aa)    
Predicted Functional Partners:
Ccrd_021127
Zinc finger, RING/FYVE/PHD-type.
      
 0.524
Ccrd_020929
Choline transporter-like protein; Belongs to the CTL (choline transporter-like) family.
      
 0.524
Ccrd_018691
Uncharacterized protein.
      
 0.524
Ccrd_021559
CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.
      
 0.524
Ccrd_009664
Uncharacterized protein.
      
 0.523
Ccrd_009230
Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase.
      
 0.503
Ccrd_003544
Aldolase-type TIM barrel.
      
 0.469
Ccrd_025135
AAA domain-containing protein.
      
 0.438
Ccrd_018596
Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).
      
 0.435
Ccrd_009889
Chloride channel ClC-plant; Belongs to the chloride channel (TC 2.A.49) family.
      
 0.408
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.