STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_011261Tryptophan synthase. (638 aa)    
Predicted Functional Partners:
Ccrd_017804
Uncharacterized protein; Belongs to the TrpA family.
 
 0.998
Ccrd_010989
Aldolase-type TIM barrel.
 
 
 0.995
Ccrd_016827
Aldolase-type TIM barrel.
 
 
 0.985
Ccrd_025778
Glutamine amidotransferase type-1 domain-containing protein.
 
 
 0.984
Ccrd_013282
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
     
 0.966
Ccrd_005155
Anthranilate phosphoribosyl transferase.
 
 
 0.957
Ccrd_018862
Anthranilate phosphoribosyl transferase.
 
 
 0.956
Ccrd_004770
IGPS domain-containing protein.
 
 
 0.955
Ccrd_010988
Aldolase-type TIM barrel.
 
 
 0.955
Ccrd_021827
Threonine dehydratase.
  
 0.953
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.