STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_011011Uncharacterized protein. (161 aa)    
Predicted Functional Partners:
Ccrd_025486
Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family.
   
  
 0.567
Ccrd_026137
Uncharacterized protein.
  
    0.538
Ccrd_022703
Uncharacterized protein.
  
     0.532
Ccrd_023720
Uncharacterized protein.
  
     0.531
Ccrd_015597
Uncharacterized protein.
  
     0.531
Ccrd_019398
Heavy metal-associated domain, HMA.
  
     0.530
Ccrd_015598
Uncharacterized protein.
  
     0.529
Ccrd_022676
Uncharacterized protein.
  
     0.528
Ccrd_023721
Uncharacterized protein.
  
     0.526
Ccrd_002033
SAND domain-containing protein.
  
     0.517
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.