STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_009393Leucine-rich repeat-containing protein. (214 aa)    
Predicted Functional Partners:
Ccrd_025784
Leucine-rich repeat-containing protein.
  
     0.490
Ccrd_025474
Leucine-rich repeat-containing protein.
  
     0.486
Ccrd_025785
Leucine-rich repeat-containing protein.
  
     0.484
Ccrd_025539
Leucine-rich repeat-containing protein.
  
     0.473
Ccrd_015010
Uncharacterized protein.
    
 
 0.465
Ccrd_022385
Uncharacterized protein.
    
 
 0.465
Ccrd_026073
Leucine-rich repeat-containing protein.
  
     0.463
Ccrd_026843
Uncharacterized protein.
  
 
  0.458
Ccrd_025541
DNA-binding WRKY.
  
     0.453
Ccrd_020702
SPRY domain-containing protein.
      
 0.450
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.