STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_009339Uncharacterized protein. (518 aa)    
Predicted Functional Partners:
Ccrd_018753
Uncharacterized protein.
  
     0.521
Ccrd_025143
Uncharacterized protein.
  
     0.515
Ccrd_018734
Uncharacterized protein.
  
     0.504
Ccrd_019025
Uncharacterized protein.
  
     0.503
Ccrd_025599
Uncharacterized protein.
  
     0.502
Ccrd_014817
Uncharacterized protein.
  
     0.502
Ccrd_018044
Uncharacterized protein family UPF0503.
  
     0.498
Ccrd_014904
Uncharacterized protein.
  
     0.494
Ccrd_012572
Remorin, C-terminal.
  
     0.493
Ccrd_005497
Uncharacterized protein.
  
     0.490
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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