STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_009462HSP20-like chaperone. (486 aa)    
Predicted Functional Partners:
Ccrd_020795
SecY/SEC61-alpha family; Belongs to the SecY/SEC61-alpha family.
   
 0.833
Ccrd_001121
Plug_translocon domain-containing protein; Belongs to the SecY/SEC61-alpha family.
   
 0.833
Ccrd_017804
Uncharacterized protein; Belongs to the TrpA family.
   
  
 0.718
Ccrd_005742
Nucleotide-binding, alpha-beta plait.
   
 
 0.708
Ccrd_025893
Copper centre Cu(A).
   
 
 0.694
Ccrd_007401
Uncharacterized protein.
   
 
 0.694
Ccrd_005890
Mog1/PsbP, alpha/beta/alpha sandwich.
   
 
 0.672
Ccrd_005893
Membrane transporter, Tim44-related/Ribosomal protein L45.
   
 
 0.672
Ccrd_003963
Ribosomal protein S16.
  
 
 0.625
Ccrd_004734
Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.
  
  
 0.623
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.