STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_009270Longin domain-containing protein; Belongs to the synaptobrevin family. (221 aa)    
Predicted Functional Partners:
Ccrd_014764
Sec1-like protein; Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.717
Ccrd_023291
Target SNARE coiled-coil domain-containing protein.
    
 0.616
Ccrd_016183
Target SNARE coiled-coil domain-containing protein.
    
 0.616
Ccrd_015213
Target SNARE coiled-coil domain-containing protein.
    
 0.616
Ccrd_015214
Uncharacterized protein.
    
 0.616
Ccrd_016416
Six-bladed beta-propeller, TolB-like protein.
    
 
 0.546
Ccrd_010463
Uncharacterized protein.
    
 
 0.546
Ccrd_002758
Syntaxin/epimorphin, conserved site-containing protein; Belongs to the syntaxin family.
    
 0.532
Ccrd_002252
YqaJ domain-containing protein.
    
 0.532
Ccrd_015942
Uncharacterized protein.
    
 0.532
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.