STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_008310Uncharacterized protein. (76 aa)    
Predicted Functional Partners:
Ccrd_023175
Uncharacterized protein.
  
     0.514
Ccrd_024144
NADH-ubiquinone reductase complex 1 MLRQ subunit.
  
    0.497
Ccrd_015088
Homeodomain-like protein.
  
     0.460
Ccrd_016243
Uncharacterized protein.
  
     0.454
Ccrd_018457
Uncharacterized protein.
  
     0.443
Ccrd_012345
Uncharacterized protein.
  
    0.430
Ccrd_012173
Uncharacterized protein.
  
     0.429
Ccrd_002606
Pleckstrin homology domain-containing protein.
  
     0.424
Ccrd_007314
Cytochrome b-c1 complex subunit 9.
  
    0.420
Ccrd_000215
Uncharacterized protein family Cys-rich.
  
     0.420
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
Server load: low (24%) [HD]