STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_026471Six-bladed beta-propeller, TolB-like protein. (684 aa)    
Predicted Functional Partners:
Ccrd_004649
Uncharacterized protein.
      
 0.522
Ccrd_006751
Chalcone/stilbene synthase, C-terminal; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.
  
 0.443
Ccrd_001908
Chalcone/stilbene synthase, C-terminal; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.
  
 0.443
Ccrd_013382
Chalcone/stilbene synthase, active site-containing protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.
  
 0.443
Ccrd_012767
Chalcone/stilbene synthase, active site-containing protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.
  
 0.443
Ccrd_018889
Chalcone/stilbene synthase, active site-containing protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.
  
 0.443
Ccrd_012539
Uncharacterized protein.
      
 0.437
Ccrd_004146
Aminotransferase, class I/classII.
    
 0.409
Ccrd_001378
Aminotransferase, class I/classII.
    
 0.409
Ccrd_009934
Aminotransferase, class I/classII.
    
 0.409
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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