STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_0085825'-3' exonuclease, C-terminal domain-containing protein. (738 aa)    
Predicted Functional Partners:
Ccrd_017954
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
  
 0.988
Ccrd_025340
Actin-binding FH2.
   
 0.986
Ccrd_005533
DNA ligase, ATP-dependent, central.
  
 0.979
Ccrd_019116
DNA mismatch repair protein, MSH2; Component of the post-replicative DNA mismatch repair system (MMR).
   
 0.963
Ccrd_019389
DNA mismatch repair protein MutS, core.
   
 0.963
Ccrd_009051
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
   
 0.953
Ccrd_017724
DNA mismatch repair protein.
   
 0.951
Ccrd_014223
DNA repair nuclease, XPF-type/Helicase.
   
 0.950
Ccrd_012577
DNA polymerase.
   
 0.939
Ccrd_015675
Helicase ATP-binding domain-containing protein.
   
 0.937
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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