STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_007789Poly(A) polymerase, central domain-containing protein. (190 aa)    
Predicted Functional Partners:
Ccrd_025239
YTH domain-containing protein.
    
 0.990
Ccrd_006702
Uncharacterized protein.
    
 0.990
Ccrd_000521
Zinc finger, CCCH-type.
    
 0.990
Ccrd_011457
Cleavage and polyadenylation specificity factor subunit 2.
    
 0.930
Ccrd_010561
Beta-Casp domain-containing protein.
   
 0.930
Ccrd_021011
WD_REPEATS_REGION domain-containing protein.
    
 0.927
Ccrd_019759
RNA-processing protein, HAT helix.
    
 0.912
Ccrd_023183
Cleavage stimulation factor subunit 2, hinge domain-containing protein.
    
 0.897
Ccrd_004222
Pre-mRNA polyadenylation factor Fip1.
   
 0.881
Ccrd_009869
Pre-mRNA polyadenylation factor Fip1.
   
 0.881
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.