STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_005705Lipase, GDSL. (325 aa)    
Predicted Functional Partners:
Ccrd_006065
Cupredoxin.
  
     0.476
Ccrd_024624
Peroxidase; Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.
  
 
   0.460
Ccrd_007943
Cupredoxin.
  
     0.458
Ccrd_002493
Cupredoxin.
  
     0.445
Ccrd_000534
F-box domain, cyclin-like protein.
    
  0.435
Ccrd_008734
Cupin 1.
  
     0.428
Ccrd_004939
Uncharacterized protein.
  
     0.422
Ccrd_022309
Photosystem II cytochrome b559, alpha subunit.
   
 
 0.419
Ccrd_009757
Leucine zipper, homeobox-associated.
  
     0.416
Ccrd_024744
Ribosomal protein L21e.
   
   0.413
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.