STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_005116DUF971 domain-containing protein. (137 aa)    
Predicted Functional Partners:
Ccrd_014232
Phosphoribosyl-AMP cyclohydrolase domain-containing protein.
    
  0.880
Ccrd_020336
Carbohydrate kinase, FGGY, C-terminal.
      
 0.524
Ccrd_005637
Homeodomain-like protein.
      
 0.438
Ccrd_011539
Peptidase T2, asparaginase 2.
      
 0.437
Ccrd_026903
Protein kinase, ATP binding site-containing protein.
      
 0.424
Ccrd_004599
EVE domain-containing protein.
      
 0.414
Ccrd_023686
DNA/pantothenate metabolism flavoprotein, C-terminal.
     
 0.402
Ccrd_023037
Flavoprotein.
     
 0.402
Ccrd_022794
Flavoprotein.
     
 0.402
Ccrd_022200
DNA/pantothenate metabolism flavoprotein, C-terminal.
     
 0.402
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.