STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_004176Histone H2A; Belongs to the histone H2A family. (136 aa)    
Predicted Functional Partners:
Ccrd_015218
Uncharacterized protein.
    
 
 0.922
Ccrd_015423
YL1 nuclear.
    
 
 0.910
Ccrd_012262
RuvB-like helicase; Belongs to the RuvB family.
   
 0.887
Ccrd_010329
Uncharacterized protein; Belongs to the actin family.
   
 0.854
Ccrd_021741
Uncharacterized protein.
    
 0.843
Ccrd_021740
Uncharacterized protein.
    
 0.843
Ccrd_021739
HAS subgroup.
    
 0.843
Ccrd_026140
ARID/BRIGHT DNA-binding domain-containing protein.
   
 0.842
Ccrd_021412
High mobility group (HMG) box domain-containing protein.
   
 0.842
Ccrd_014320
Uncharacterized protein.
   
 0.842
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.