STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccrd_002612Lipase, class 3. (343 aa)    
Predicted Functional Partners:
Ccrd_016919
F-box domain, cyclin-like protein.
  
     0.524
Ccrd_020348
Uncharacterized protein.
  
     0.524
Ccrd_009814
Uncharacterized protein.
  
     0.520
Ccrd_022118
UDP-glucuronosyl/UDP-glucosyltransferase.
  
     0.517
Ccrd_019230
Uncharacterized protein.
  
     0.515
Ccrd_009815
Uncharacterized protein.
  
     0.515
Ccrd_005372
Uncharacterized protein.
  
     0.511
Ccrd_010221
Uncharacterized protein.
  
     0.511
Ccrd_024271
TAXi_N domain-containing protein.
  
     0.510
Ccrd_019426
B-cell receptor-associated 31-like protein.
  
     0.506
Your Current Organism:
Cynara cardunculus
NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.